STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mshO-2MSHA biogenesis protein MshO. (262 aa)    
Predicted Functional Partners:
mshD-2
MSHA pilin protein MshD.
 
     0.948
mshP-2
MSHA biogenesis protein MshP.
 
     0.936
mshQ-2
MSHA biogenesis protein MshQ.
 
     0.854
mshJ
Type IV pilus, MSHA biogenesis protein MshJ.
 
   
 0.797
mshD-4
Type IV pilus, MSHA biogenesis protein MshD.
 
  
 0.796
mshB
Type IV pilus, MSHA pilin protein MshB.
 
     0.786
mshI
Type IV pilus, MSHA biogenesis protein MshI.
 
  
 0.784
CED56686.1
Putative secretion protein.
 
     0.783
mshA
Type IV pilus, MSHA pilin protein MshA.
 
     0.783
mshD
MSHA pilin protein MshD.
 
     0.781
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.