STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aotPArginine/ornithine periplasmic binding protein-dependent transporter, ATP-binding component. (256 aa)    
Predicted Functional Partners:
aotM
Arginine/ornithine periplasmic binding protein-dependent transporter, inner membrane component.
 
 0.993
aotQ
Arginine/ornithine periplasmic binding protein-dependent transporter, inner membrane component.
 
 
 0.990
aotJ
Arginine/ornithine periplasmic binding protein-dependent transporter; Belongs to the bacterial solute-binding protein 3 family.
 
 
 0.986
CED70105.1
Putative amino-acid ABC transporter, permease protein.
     0.803
CED57056.1
Amino acid ABC transporter, inner membrane component.
 
     0.775
CED57058.1
Amino acid ABC transporter, system inner membrane component.
 
     0.775
CED70106.1
Putative amino acid ABC transporter, substrate-binding protein.
 
  
 0.763
CED57057.1
Amino acid ABC transporter, extracellular solute-binding protein.
 
  
 0.742
aapM
General L-amino acid ABC transporter permease protein.
  
   
 0.694
sapD
Peptide transport system ATP-binding protein SapD; Belongs to the ABC transporter superfamily.
 
     
0.647
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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