STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oppDOligopeptide transport ATP-binding protein D; Belongs to the ABC transporter superfamily. (321 aa)    
Predicted Functional Partners:
oppC
Oligopeptide transport system permease protein C.
 
 0.998
oppB
Oligopeptide ABC transporter, permease protein B.
 0.994
oppA
Oligopeptide ABC transporter, permease protein A.
 
 
 0.990
oppF
Oligopeptide transport ATP-binding protein F; Belongs to the ABC transporter superfamily.
 
  
 
0.980
CED70548.1
(GlcNAc)2 ABC transporter, permease.
  
 0.947
CED72636.1
Peptide ABC transporter, permease protein.
  
 0.921
sapC
Peptide transport system permease protein SapC.
     0.882
CED70549.1
(GlcNAc)2 ABC transporter, permease.
 
 0.863
CED72637.1
Peptide ABC transporter, permease protein.
 
 0.818
ftsE
Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.
 
     
0.814
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.