STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oppAOligopeptide ABC transporter, permease protein A. (554 aa)    
Predicted Functional Partners:
oppB
Oligopeptide ABC transporter, permease protein B.
 0.998
oppC
Oligopeptide transport system permease protein C.
 
 
 0.994
oppF
Oligopeptide transport ATP-binding protein F; Belongs to the ABC transporter superfamily.
 
 
 0.991
oppD
Oligopeptide transport ATP-binding protein D; Belongs to the ABC transporter superfamily.
 
 
 0.991
CED70549.1
(GlcNAc)2 ABC transporter, permease.
 
 
 0.888
CED72637.1
Peptide ABC transporter, permease protein.
 
 
 0.862
CED57685.1
Oligopeptide ABC transporter, ATP-binding component; Belongs to the ABC transporter superfamily.
 
 
 0.818
CED70755.1
Putative oligopeptide transport system, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
  
 0.787
CED71728.1
ABC-type cobalt transport system, ATP-binding protein.
  
 0.778
CED72639.1
Peptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.761
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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