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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED71794.1UPF0319 protein; Belongs to the UPF0319 family. (210 aa)    
Predicted Functional Partners:
nrfG
Putative formate-dependent nitrite reductase complex NrfG subunit.
  
     0.697
CED71490.1
Putative cyclic nucleotide-binding protein.
  
     0.568
CED71981.1
UPF0304 protein; Belongs to the UPF0304 family.
  
     0.554
CED71793.1
Putative uncharacterized protein; Similar to Aliivibrio salmonicida (strain LFI1238) (Vibrio salmonicida (strain LFI1238)) subname: full=putative uncharacterized protein UniProt:B6EIU0 (EMBL:FM178379) (541 aa) fasta scores: E()=1.4e-132, 93.151% id in 365 aa. The CDS appears to be truncated at the N-terminus.
       0.553
CED70819.1
Putative uncharacterized protein.
  
     0.519
CED72613.1
Putative membrane protein, AsmA family.
  
     0.498
CED57053.1
Membrane protein.
  
     0.485
CED57725.1
Putative uncharacterized protein.
  
     0.470
CED70787.1
Lipoprotein.
  
     0.452
CED70971.1
Putative regulator of competence-specific genes.
  
     0.452
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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