sppA protein (Aliivibrio wodanis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

sppA

Protease IV (endopeptidase IV). (618 aa)

Predicted Functional Partners:

ansA

0.671

fadH

0.633

CED72098.1

0.584

topB

0.479

thrA

0.425

Your Current Organism:

Aliivibrio wodanis

NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CED72098.1	sppA	AWOD_I_2033	AWOD_I_1765	D-alanyl-D-alanine carboxypeptidase.	Protease IV (endopeptidase IV).	0.584
ansA	fadH	AWOD_I_1766	AWOD_I_1764	L-asparaginase I.	2,4-dienoyl-CoA reductase [NADPH].	0.572
ansA	sppA	AWOD_I_1766	AWOD_I_1765	L-asparaginase I.	Protease IV (endopeptidase IV).	0.671
ansA	thrA	AWOD_I_1766	AWOD_I_2198	L-asparaginase I.	Bifunctional aspartokinase/homoserine dehydrogenase I; In the C-terminal section; belongs to the homoserine dehydrogenase family.	0.829
fadH	ansA	AWOD_I_1764	AWOD_I_1766	2,4-dienoyl-CoA reductase [NADPH].	L-asparaginase I.	0.572
fadH	sppA	AWOD_I_1764	AWOD_I_1765	2,4-dienoyl-CoA reductase [NADPH].	Protease IV (endopeptidase IV).	0.633
fadH	topB	AWOD_I_1764	AWOD_I_1763	2,4-dienoyl-CoA reductase [NADPH].	DNA topoisomerase III; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA su [...]	0.660
sppA	CED72098.1	AWOD_I_1765	AWOD_I_2033	Protease IV (endopeptidase IV).	D-alanyl-D-alanine carboxypeptidase.	0.584
sppA	ansA	AWOD_I_1765	AWOD_I_1766	Protease IV (endopeptidase IV).	L-asparaginase I.	0.671
sppA	fadH	AWOD_I_1765	AWOD_I_1764	Protease IV (endopeptidase IV).	2,4-dienoyl-CoA reductase [NADPH].	0.633
sppA	thrA	AWOD_I_1765	AWOD_I_2198	Protease IV (endopeptidase IV).	Bifunctional aspartokinase/homoserine dehydrogenase I; In the C-terminal section; belongs to the homoserine dehydrogenase family.	0.425
sppA	topB	AWOD_I_1765	AWOD_I_1763	Protease IV (endopeptidase IV).	DNA topoisomerase III; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA su [...]	0.479
thrA	ansA	AWOD_I_2198	AWOD_I_1766	Bifunctional aspartokinase/homoserine dehydrogenase I; In the C-terminal section; belongs to the homoserine dehydrogenase family.	L-asparaginase I.	0.829
thrA	sppA	AWOD_I_2198	AWOD_I_1765	Bifunctional aspartokinase/homoserine dehydrogenase I; In the C-terminal section; belongs to the homoserine dehydrogenase family.	Protease IV (endopeptidase IV).	0.425
topB	fadH	AWOD_I_1763	AWOD_I_1764	DNA topoisomerase III; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA su [...]	2,4-dienoyl-CoA reductase [NADPH].	0.660
topB	sppA	AWOD_I_1763	AWOD_I_1765	DNA topoisomerase III; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA su [...]	Protease IV (endopeptidase IV).	0.479

Server load: low (24%) [HD]

Permalink

Network

Neighborhood

Databases

Co-occurrence

Textmining

Fusion

Experiments

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About