STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED71860.1Transcriptional regulator, AraC-family. (294 aa)    
Predicted Functional Partners:
CED71859.1
Putative riboflavin biosynthesis protein.
       0.699
CED71861.1
Iron-containing alcohol dehydrogenase.
     
 0.647
CED57561.1
HTH-type transcriptional regulator, AraC-family.
  
     0.646
CED71156.1
Transcriptional regulator, AraC-family.
  
     0.625
CED57022.1
Putative HTH-type regulatory protein, AraC family.
  
     0.610
CED71142.1
Transcriptional regulator, AraC-family.
  
     0.522
rpoA
RNA polymerase alpha-subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.507
CED57217.1
HTH-type transcriptional regulator, AraC family.
  
     0.400
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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