STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED71899.1Putative uncharacterized protein. (289 aa)    
Predicted Functional Partners:
CED71901.1
Putative uncharacterized protein.
 
 
 0.980
CED71906.1
Putative 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III.
 
  
 0.972
CED71902.1
ABC-2 type transporter, ATP-binding protein.
 
     0.948
CED71904.1
Membrane protein.
 
     0.947
CED71907.1
Membrane protein.
 
    0.945
CED71905.1
Putative DNA binding protein.
 
     0.943
CED71903.1
ABC transporter, ATP-binding protein.
 
     0.918
CED71900.1
Putative beta-ketoacyl synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
     0.879
CED70905.1
Acyl carrier protein.
 
 
 0.770
CED71694.1
Putative uncharacterized protein.
  
     0.748
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.