STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED71905.1Putative DNA binding protein. (137 aa)    
Predicted Functional Partners:
CED71906.1
Putative 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III.
 
     0.956
CED71907.1
Membrane protein.
 
     0.956
CED71901.1
Putative uncharacterized protein.
 
     0.952
CED71902.1
ABC-2 type transporter, ATP-binding protein.
 
     0.952
CED71904.1
Membrane protein.
 
     0.952
CED71899.1
Putative uncharacterized protein.
 
     0.943
CED71903.1
ABC transporter, ATP-binding protein.
 
     0.911
CED71900.1
Putative beta-ketoacyl synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
     0.812
CED70901.1
Putative O-methyltransferase.
 
     0.716
CED70905.1
Acyl carrier protein.
 
     0.706
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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