STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
ptsGPTS system, glucose-specific EIIBC component [includes: glucose permease IIC component; glucose-specific phosphotransferase enzyme II component]. (476 aa)    
Predicted Functional Partners:
crr
Glucose-specific phosphotransferase enzyme IIA component (PTS system).
 0.999
CED57707.1
PTS system, sucrose-specific EIIBC component.
 
 
 0.948
pgi
Glucose-6-phosphate isomerase; Belongs to the GPI family.
    
 0.926
ptsH
Phosphocarrier protein Hpr, histidine-containing protein (PTS system).
  
 
 0.924
pgm
Phosphoglucomutase.
    
 0.916
yeaD
Putative aldose 1-epimerase; Belongs to the glucose-6-phosphate 1-epimerase family.
     
  0.900
nagC
N-acetylglucosamine repressor.
  
 
 0.887
nagK
N-acetyl-d-glucosamine kinase; Catalyzes the phosphorylation of N-acetyl-D-glucosamine (GlcNAc) derived from cell-wall degradation, yielding GlcNAc-6-P.
  
 
 0.887
chb
N,N'-diacetylchitobiase (chitobiase).
 
  
 0.881
CED70136.1
Putative beta-N-acetylhexosaminidase.
  
  
 0.862
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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