STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED71965.1Putative uncharacterized protein. (90 aa)    
Predicted Functional Partners:
CED70334.1
Tyrosine specific protein phosphatase.
  
     0.620
CED70353.1
Membrane protein.
  
     0.597
CED71069.1
Chitodextrinase.
  
     0.562
CED56865.1
Putative SAM dependent methyltransferases.
  
     0.559
CED71579.1
Putative uncharacterized phage protein.
  
     0.536
CED71966.1
Methyl-accepting chemotaxis protein.
       0.507
trmU
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
       0.496
CED71650.1
Putative uncharacterized protein.
  
     0.484
purB
Adenylosuccinate lyase (adenylosuccinase); Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
       0.474
gsk-2
Inosine-guanosine kinase.
 
     0.469
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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