STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
citSSensor protein, histidine kinase. (533 aa)    
Predicted Functional Partners:
CED71978.1
HTH-type transcriptional regulator, two-component response regulator.
 
 
 0.983
CED71972.1
Putative tricarboxylic transport protein.
 
    0.717
CED71974.1
Putative tricarboxylic transport protein.
 
     0.685
CED71977.1
Putative uncharacterized protein; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily.
     
 0.593
CED71976.1
Putative phospholipase.
       0.545
CED71973.1
Membrane protein.
 
     0.488
CED71224.1
Membrane receptor, histidine kinase; Probably regulates genes involved in cell wall metabolism and genes involved in virulence.
  
   
 0.482
fhs
Formate--tetrahydrofolate ligase (formyltetrahydrofolate synthetase).
       0.482
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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