STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sixAPhosphohistidine phosphatase SixA. (156 aa)    
Predicted Functional Partners:
CED71994.1
Peptidase family M16; Belongs to the peptidase M16 family.
 
     0.700
gltB
Glutamate synthase, large subunit.
       0.477
CED70991.1
Putative uncharacterized protein.
  
     0.468
ndpA
Nucleoid-associated protein Ndpa.
 
     0.456
CED70681.1
Putative uncharacterized protein.
  
     0.449
CED72343.1
Putative uncharacterized protein, BolA family; Belongs to the BolA/IbaG family.
  
     0.445
CED70457.1
Putative adenylate cyclase.
 
     0.437
nfuA
Fe/S biogenesis protein nfuA; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins.
  
     0.429
CED71992.1
UPF0115 protein; Belongs to the UPF0115 family.
  
   
 0.422
CED72582.1
Integral membrane protein GlpG.
 
     0.422
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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