STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED72072.1Putative porin. (369 aa)    
Predicted Functional Partners:
CED70673.1
Membrane protein.
  
 
   0.774
parB
Chromosome plasmid partition protein; Belongs to the ParB family.
  
     0.770
CED71683.1
Putative exported protein.
  
     0.766
CED70971.1
Putative regulator of competence-specific genes.
  
     0.760
CED57722.1
Putative nuclease.
  
     0.759
CED71817.1
Putative uncharacterized protein.
  
     0.757
CED56714.1
Putative lipoprotein.
  
     0.748
CED57430.1
Outer membrane protein, OmpA family.
  
 
 0.747
CED57427.1
Outer membrane protein, OmpA family.
  
 
 0.746
CED71824.1
Putative preprotein translocase SecA.
  
     0.738
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.