STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
narPNitrate/nitrite response regulator protein NarP. (203 aa)    
Predicted Functional Partners:
narQ
Nitrate/nitrite sensor protein NarQ.
 
 0.997
CED71636.1
Sensor protein, GGDEF family.
  
 
 0.961
varS
Response regulator, histidine kinase VarS.
 
 
 
 0.951
arcB
Sensor protein.
 
 
 
 0.893
luxU
Phosphorelay protein LuxU.
   
 
 0.881
CED72093.1
Putative lipoprotein.
       0.783
CED57804.1
Sensor protein.
 
 
 
 0.781
CED71668.1
Sensor protein, histidine kinase.
 
 
 
 0.733
napD
NapD protein; Chaperone for NapA, the catalytic subunit of the periplasmic nitrate reductase. It binds directly and specifically to the twin- arginine signal peptide of NapA, preventing premature interaction with the Tat translocase and premature export.
 
     0.668
CED71450.1
Response regulator, histidine kinase.
 
 
 
 0.651
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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