STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED72158.1Putative peroxidase/antioxidant. (202 aa)    
Predicted Functional Partners:
CED70395.1
Hybrid peroxiredoxin (thioredoxin reductase).
  
 0.932
CED71657.1
Glutaredoxin-3 (grx3).
  
 0.932
trxB
Thioredoxin reductase.
  
 
 0.921
catA
Catalase; Belongs to the catalase family.
  
 
 0.842
sodB
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
 
  
 0.817
CED71710.1
Thiol/disulfide interchange protein.
  
 0.760
dsbE
Thiol:disulfide interchange protein DsbE (cytochrome c biogenesis protein CcmG).
  
 0.760
CED72627.1
Putative thioredoxin.
  
 0.760
bcp
Putative peroxiredoxin Bcp.
 
 
 0.748
trxA
Thioredoxin 1; Belongs to the thioredoxin family.
  
 
 0.678
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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