STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
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[Homology]
Score
CED72261.1Putative ribonuclease activity regulator protein; Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions. (158 aa)    
Predicted Functional Partners:
aceA
Isocitrate lyase.
 
    0.594
CED56917.1
Malate synthase.
 
     0.449
rhlE
ATP-dependent RNA helicase (DEAD/DEAH box helicase); DEAD-box RNA helicase involved in ribosome assembly. Has RNA- dependent ATPase activity and unwinds double-stranded RNA.
    
 
 0.439
dbpA
ATP-independent RNA helicase (DEAD/DEAH box helicase); Belongs to the DEAD box helicase family.
    
 
 0.439
rhlE-2
ATP-dependent RNA helicase 1; Belongs to the DEAD box helicase family.
    
 
 0.439
deaD
Cold-shock DEAD box protein A (ATP-independent RNA helicase); DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.
    
 
 0.439
CED57214.1
ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.
    
 
 0.439
rhlB
ATP-dependent RNA helicase RhlB; DEAD-box RNA helicase involved in RNA degradation. Has RNA- dependent ATPase activity and unwinds double-stranded RNA. Belongs to the DEAD box helicase family. RhlB subfamily.
    
 
 0.439
CED71220.1
Putative helicase (DEAD/DEAH box helicase); Belongs to the DEAD box helicase family.
    
 
 0.439
rhlE-3
Putative ATP-dependent RNA helicase RhlE; Belongs to the DEAD box helicase family.
    
 
 0.439
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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