Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CED72283.1Putative bacterial type II secretion system protein. (316 aa)    
Predicted Functional Partners:
tadB
Bacterial type II secretion system protein F.
 
 
 0.998
tadA
Type II/IV secretion system protein, ATP binding domain; Similar to Actinomycetemcomitans TadA UniProt:Q9XC06 (426 aa) fasta scores: E()=1.3e-77, 53.318% id in 422 aa.
 
 
 0.993
CED57502.1
Type II/III secretion system protein; Belongs to the bacterial secretin family.
 
 
 0.991
tadC
Bacterial type II secretion system protein F.
 
 
0.987
rcpC
Putative Flp pilus assembly protein.
  
 
 0.981
CED72282.1
TPR repeat-containing protein.
 
   
 0.890
CED57803.1
Response regulator.
   
    0.758
tadG
Membrane associated secretion system protein.
  
    0.545
tadE
Membrane associated secretion system protein.
  
    0.543
CED57505.1
Fimbrial protein, Flp/Fap pilin component.
  
  
 0.486
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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