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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pilUTwitching motility protein PilU, type II/IV secretion system protein. (367 aa)    
Predicted Functional Partners:
pilT
Twitching mobility protein PilT, type II/IV secretion system protein.
 
  
0.841
pilD
Type IV prepilin peptidase PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
  
   
 0.838
pilC
Type IV pilus assembly protein PilC.
 
   
 0.796
mshG
Type IV pilus, MSHA biogenesis protein MshG.
 
   
 0.795
CED70273.1
General secretion pathway protein F.
 
   
 0.792
epsF
General secretion pathway protein F.
 
   
 0.776
pilM
Fimbrial assembly protein PilM.
  
  
 0.742
pilQ
Fimbrial assembly protein PilQ precursor.
  
   
 0.662
CED72314.1
Membrane protein, related to K+ transport; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.
       0.638
pilN
Fimbrial assembly protein PilN.
  
  
 0.578
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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