STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
pilTTwitching mobility protein PilT, type II/IV secretion system protein. (345 aa)    
Predicted Functional Partners:
pilD
Type IV prepilin peptidase PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
   
 0.904
pilU
Twitching motility protein PilU, type II/IV secretion system protein.
 
  
0.893
pilM
Fimbrial assembly protein PilM.
 
   
 0.829
pilC
Type IV pilus assembly protein PilC.
 
  
 0.814
mshG
Type IV pilus, MSHA biogenesis protein MshG.
 
  
 0.813
CED70273.1
General secretion pathway protein F.
 
  
 0.811
pilQ
Fimbrial assembly protein PilQ precursor.
 
   
 0.804
epsF
General secretion pathway protein F.
 
  
 0.802
pilO
Fimbrial assembly protein PilO.
 
  
 0.754
pilN
Fimbrial assembly protein PilN.
 
  
 0.694
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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