STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ptsNNitrogen regulatory IIA protein, PTS system. (147 aa)    
Predicted Functional Partners:
ptsO
Phosphocarrier protein NPr.
 
 
 0.990
CED72356.1
Sigma-54 modulation protein.
 
  
 0.945
CED57019.1
PTS system, IIA component.
 
 
 0.941
CED72358.1
Putative ATP/GTP-binding protein; Displays ATPase and GTPase activities.
  
  
 0.932
rpoN
RNA polymerase sigma-54 factor (sigma-N); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.891
CED57021.1
PTS system, IIBC component.
 
  
 0.857
mtlA
PTS system, mannitol-specific EIICBA component.
 
  
 0.806
CED57024.1
PTS system, fructose-like permease IIC component.
 
  
 0.794
ptsI
Phosphoenolpyruvate-protein phosphotransferase enzyme I (PTS system); General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr).
 
  
 0.779
fruA
PTS system, fructose-specific IIBC component.
 
  
 0.754
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.