Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
mshP-3Putative exported protein MshP. (145 aa)    
Predicted Functional Partners:
mshO-3
Putative exported protein MshO.
 
  
 0.970
mshD-3
Type IV pilus, MSHA pilin protein MshD.
 
     0.953
mshN
Type IV pilus, MSHA biogenesis protein MshN.
 
     0.836
mshB
Type IV pilus, MSHA pilin protein MshB.
 
     0.822
mshA
Type IV pilus, MSHA pilin protein MshA.
 
     0.812
mshI
Type IV pilus, MSHA biogenesis protein MshI.
 
  
 0.803
mshD
MSHA pilin protein MshD.
 
     0.799
mshC-3
Type IV pilus, MSHA pilin protein MshC.
       0.792
mshD-2
MSHA pilin protein MshD.
 
     0.774
mshP-2
MSHA biogenesis protein MshP.
  
     0.773
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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