STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mshAType IV pilus, MSHA pilin protein MshA. (153 aa)    
Predicted Functional Partners:
mshO-3
Putative exported protein MshO.
 
  
 0.889
mshD-3
Type IV pilus, MSHA pilin protein MshD.
 
   
 0.874
mshP-3
Putative exported protein MshP.
 
     0.812
mshD-4
Type IV pilus, MSHA biogenesis protein MshD.
 
  
 0.798
mshJ
Type IV pilus, MSHA biogenesis protein MshJ.
 
   
 0.798
mshG
Type IV pilus, MSHA biogenesis protein MshG.
 
  
 0.792
mshO
MSHA biogenesis protein MshO.
 
     0.786
mshO-2
MSHA biogenesis protein MshO.
 
     0.783
mshI
Type IV pilus, MSHA biogenesis protein MshI.
 
  
 0.780
mshD-2
MSHA pilin protein MshD.
 
   
 0.770
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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