Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
mshMType IV pilus, MSHA biogenesis protein MshM. (282 aa)    
Predicted Functional Partners:
mshD-4
Type IV pilus, MSHA biogenesis protein MshD.
 
  
 0.911
mshJ
Type IV pilus, MSHA biogenesis protein MshJ.
 
  
 0.901
mshN
Type IV pilus, MSHA biogenesis protein MshN.
 
     0.873
mshI
Type IV pilus, MSHA biogenesis protein MshI.
 
     0.866
mshK
Type IV pilus, MSHA biogenesis protein MshK.
       0.823
mshH
Putative membrane associated signaling protein, MshH.
       0.642
flgC
Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
    
   0.539
CED56686.1
Putative secretion protein.
 
     0.536
mshB
Type IV pilus, MSHA pilin protein MshB.
 
     0.536
mshO-2
MSHA biogenesis protein MshO.
 
     0.514
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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