Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
mshJType IV pilus, MSHA biogenesis protein MshJ. (212 aa)    
Predicted Functional Partners:
mshD-4
Type IV pilus, MSHA biogenesis protein MshD.
 
  
 0.968
mshI
Type IV pilus, MSHA biogenesis protein MshI.
 
   
 0.961
mshN
Type IV pilus, MSHA biogenesis protein MshN.
 
     0.953
mshM
Type IV pilus, MSHA biogenesis protein MshM.
 
  
 0.901
mshB
Type IV pilus, MSHA pilin protein MshB.
 
   
 0.840
mshK
Type IV pilus, MSHA biogenesis protein MshK.
       0.839
mshQ
MSHA biogenesis protein MshQ.
 
   
 0.830
mshD
MSHA pilin protein MshD.
 
   
 0.803
mshD-3
Type IV pilus, MSHA pilin protein MshD.
 
   
 0.802
CED56686.1
Putative secretion protein.
 
   
 0.798
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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