STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED72422.1Putative lipoprotein. (169 aa)    
Predicted Functional Partners:
fklB
FKBP-type peptidyl-prolyl cis-trans isomerase.
       0.592
CED72432.1
Putative uncharacterized protein.
  
     0.575
CED57374.1
Putative uncharacterized protein.
  
     0.558
CED57859.1
Membrane protein.
  
     0.535
CED71694.1
Putative uncharacterized protein.
  
     0.489
CED72420.1
Opacity-associated protein A.
       0.472
CED56660.1
oriCII binding protein RctB.
 
      0.453
CED56964.1
Alpha-galactosidase.
  
     0.442
CED56733.1
HTH-type transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.425
CED57041.1
Putative membrane protein.
  
     0.421
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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