STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED72430.1Putative chemotactic response regulator, CheC. (153 aa)    
Predicted Functional Partners:
cheY
Chemotaxis protein CheY.
   
 0.932
CED57572.1
Methyl-accepting chemotaxis protein, CheC-like family.
  
  
 
0.903
CED56718.1
Methyl-accepting chemotaxis protein, CheC-like family.
  
  
 
0.902
CED71138.1
Putative two-component response regulator.
     
  0.900
zur
Zinc uptake regulation protein; Belongs to the Fur family.
       0.711
CED57912.1
Putative uncharacterized protein.
  
     0.672
CED71313.1
Putative uncharacterized protein.
  
     0.671
CED71652.1
Putative membrane protein.
  
   
 0.668
CED71656.1
Putative uncharacterized protein.
  
     0.661
CED57171.1
Putative uncharacterized protein.
  
     0.642
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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