STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED72435.1Putative uncharacterized protein; Similar to Aliivibrio salmonicida (strain LFI1238) (Vibrio salmonicida (strain LFI1238)) subname: full=putative exported protein flags: precursor UniProt:B6ELK4 (EMBL:FM178379) (333 aa) fasta scores: E()=1.4e-77, 76.000% id in 250 aa. CDS may be truncated in N-terminal. (252 aa)    
Predicted Functional Partners:
parB
Chromosome plasmid partition protein; Belongs to the ParB family.
  
     0.677
dnaB
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.
       0.589
mshI
Type IV pilus, MSHA biogenesis protein MshI.
 
     0.575
CED71817.1
Putative uncharacterized protein.
  
     0.572
alr-2
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
       0.567
CED71730.1
Putative lipoprotein.
  
     0.556
CED71683.1
Putative exported protein.
  
     0.554
CED72072.1
Putative porin.
  
     0.553
CED72432.1
Putative uncharacterized protein.
 
     0.527
CED70970.1
Putative uncharacterized protein.
  
     0.511
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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