Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CED72639.1Peptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily. (580 aa)    
Predicted Functional Partners:
CED72636.1
Peptide ABC transporter, permease protein.
 
 0.985
CED72637.1
Peptide ABC transporter, permease protein.
 
 
 0.965
CED70548.1
(GlcNAc)2 ABC transporter, permease.
 
 0.956
oppC
Oligopeptide transport system permease protein C.
 
 0.926
CED70549.1
(GlcNAc)2 ABC transporter, permease.
 
 
 0.917
CED72638.1
Peptide ABC transporter peptide-binding protein.
 
 
 0.911
oppB
Oligopeptide ABC transporter, permease protein B.
 
 
 0.878
sapC
Peptide transport system permease protein SapC.
     0.834
CED71727.1
ABC-type cobalt transport system, permease component.
  
 
 0.795
oppA
Oligopeptide ABC transporter, permease protein A.
 
 
 0.761
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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