STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CED72643.1Putative multidrug transporter, HlyD family; Similar to Pseudomonas aeruginosa Multidrug transporter, membrane fusion protein MexA (PDB 1VF7), evalue=3e-21, identity=(80, 326); Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (368 aa)    
Predicted Functional Partners:
CED72644.1
Putative integral membrane component of multidrug efflux system; Similar to Escherichia coli Acriflavine resistance protein F AcrF UniProt:P24181 (1034 aa) blastp scores: E()=0e-130; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.997
CED71748.1
Putative multidrug resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.988
CED57905.1
Integral membrane protein, multidrug efflux pump.
 
 0.978
CED71236.1
Outer membrane efflux protein.
 
 0.965
tolC
Outer membrane protein TolC precursor.
 
 0.963
CED57245.1
Outer membrane efflux protein.
 
 0.954
CED71749.1
Putative secretion protein, HlyD family; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  
 
0.923
CED57906.1
Secretion protein, HlyD family; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  
 
0.921
CED57917.1
Outer membrane efflux protein.
 
 0.833
CED72642.1
HTH-type transcriptional regulator, TetR family.
 
   
 0.787
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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