STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CED72647.1HTH-type transcriptional regulator, LysR-family; Belongs to the LysR transcriptional regulatory family. (294 aa)    
Predicted Functional Partners:
ilvC
Ketol-acid reductoisomerase; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate.
 
     0.794
CED57439.1
HTH-type transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.738
CED57052.1
HTH-type transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.715
CED56808.1
HTH-type transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.642
CED71426.1
HTH-type transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.637
CED70948.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.634
aphB
Transcriptional regulator AphB; Belongs to the LysR transcriptional regulatory family.
  
     0.623
CED57250.1
HTH-type transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.604
CED57899.1
HTH-type transcriptional regulator, LysR-family; Belongs to the LysR transcriptional regulatory family.
  
     0.599
CED71173.1
HTH-type transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.568
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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