yrdD protein (Aliivibrio wodanis) - STRING interaction network

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Score

yrdD

DNA topoisomerase. (190 aa)

Predicted Functional Partners:

CED72656.1

0.873

smg

0.859

CED72657.1

0.831

rpoB

0.798

rpoA

0.790

leuS

0.713

rpoC

0.708

def

0.677

fmt

0.663

rpoZ

0.651

Your Current Organism:

Aliivibrio wodanis

NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CED72656.1	CED72657.1	AWOD_I_2605	AWOD_I_2606	Smf protein.	Putative cell wall degradation enzyme.	0.839
CED72656.1	def	AWOD_I_2605	AWOD_I_2607	Smf protein.	Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	0.712
CED72656.1	fmt	AWOD_I_2605	AWOD_I_2608	Smf protein.	methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.	0.683
CED72656.1	smg	AWOD_I_2605	AWOD_I_2604	Smf protein.	Protein smg homolog; Belongs to the Smg family.	0.841
CED72656.1	yrdD	AWOD_I_2605	AWOD_I_2603	Smf protein.	DNA topoisomerase.	0.873
CED72657.1	CED72656.1	AWOD_I_2606	AWOD_I_2605	Putative cell wall degradation enzyme.	Smf protein.	0.839
CED72657.1	def	AWOD_I_2606	AWOD_I_2607	Putative cell wall degradation enzyme.	Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	0.673
CED72657.1	fmt	AWOD_I_2606	AWOD_I_2608	Putative cell wall degradation enzyme.	methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.	0.587
CED72657.1	smg	AWOD_I_2606	AWOD_I_2604	Putative cell wall degradation enzyme.	Protein smg homolog; Belongs to the Smg family.	0.869
CED72657.1	yrdD	AWOD_I_2606	AWOD_I_2603	Putative cell wall degradation enzyme.	DNA topoisomerase.	0.831
def	CED72656.1	AWOD_I_2607	AWOD_I_2605	Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	Smf protein.	0.712
def	CED72657.1	AWOD_I_2607	AWOD_I_2606	Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	Putative cell wall degradation enzyme.	0.673
def	fmt	AWOD_I_2607	AWOD_I_2608	Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.	0.975
def	smg	AWOD_I_2607	AWOD_I_2604	Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	Protein smg homolog; Belongs to the Smg family.	0.681
def	yrdD	AWOD_I_2607	AWOD_I_2603	Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	DNA topoisomerase.	0.677
fmt	CED72656.1	AWOD_I_2608	AWOD_I_2605	methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.	Smf protein.	0.683
fmt	CED72657.1	AWOD_I_2608	AWOD_I_2606	methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.	Putative cell wall degradation enzyme.	0.587
fmt	def	AWOD_I_2608	AWOD_I_2607	methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.	Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	0.975
fmt	leuS	AWOD_I_2608	AWOD_I_0724	methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.	leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.555
fmt	rpoB	AWOD_I_2608	AWOD_I_2501	methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.	DNA-directed RNA polymerase, beta-subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.407

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