STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED72657.1Putative cell wall degradation enzyme. (356 aa)    
Predicted Functional Partners:
pilQ
Fimbrial assembly protein PilQ precursor.
 
 
 
 0.965
CED71540.1
Phage tail sheath protein FI-like.
  
 
 0.938
CED71547.1
Putative uncharacterized phage protein.
  
 
 0.924
CED57845.1
Putative lipoprotein.
   
  
 0.916
pilO
Fimbrial assembly protein PilO.
 
   0.902
pilN
Fimbrial assembly protein PilN.
  
 
   0.896
pilM
Fimbrial assembly protein PilM.
  
 
   0.884
CED71545.1
Phage tail protein I.
  
 
 0.876
smg
Protein smg homolog; Belongs to the Smg family.
 
     0.869
CED71534.1
Phage late control gene D protein.
  
   0.845
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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