STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
CED72664.1Putative sporulation-control protein. (262 aa)    
Predicted Functional Partners:
pvsD
Vibrioferrin biosynthesis protein PvsD.
  
     0.673
pvsB
Vibrioferrin biosynthesis protein PvsB.
  
     0.646
pvsA
Vibrioferrin biosynthesis protein PvsA.
  
     0.635
hlyIII
Hemolysin III.
       0.627
CED71069.1
Chitodextrinase.
  
     0.537
CED72666.1
Putative uncharacterized protein.
       0.468
CED72665.1
Putative uncharacterized protein.
       0.459
pvuB
Ferric vibrioferrin-binding periplasmic protein PvuB.
  
     0.455
parB
Chromosome plasmid partition protein; Belongs to the ParB family.
  
     0.414
pvsE
Vibrioferrin biosynthesis protein PvsE; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
  
     0.414
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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