Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CED56981.1 | dsbA | AWOD_II_0333 | AWOD_I_0625 | Putative suppressor for copper-sensitivity B precursor. | Thiol:disulfide interchange protein DsbA. | 0.614 |
CED56981.1 | dsbA-2 | AWOD_II_0333 | AWOD_I_2618 | Putative suppressor for copper-sensitivity B precursor. | Thiol/disulfide interchange protein DsbA precursor. | 0.614 |
CED56981.1 | dsbB | AWOD_II_0333 | AWOD_I_1757 | Putative suppressor for copper-sensitivity B precursor. | Disulfide bond formation protein B (disulfide oxidoreductase); Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein; Belongs to the DsbB family. | 0.403 |
CED72628.1 | dsbA | AWOD_I_2577 | AWOD_I_0625 | Putative thioredoxin. | Thiol:disulfide interchange protein DsbA. | 0.614 |
CED72628.1 | dsbA-2 | AWOD_I_2577 | AWOD_I_2618 | Putative thioredoxin. | Thiol/disulfide interchange protein DsbA precursor. | 0.614 |
CED72628.1 | dsbB | AWOD_I_2577 | AWOD_I_1757 | Putative thioredoxin. | Disulfide bond formation protein B (disulfide oxidoreductase); Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein; Belongs to the DsbB family. | 0.403 |
dsbA | CED56981.1 | AWOD_I_0625 | AWOD_II_0333 | Thiol:disulfide interchange protein DsbA. | Putative suppressor for copper-sensitivity B precursor. | 0.614 |
dsbA | CED72628.1 | AWOD_I_0625 | AWOD_I_2577 | Thiol:disulfide interchange protein DsbA. | Putative thioredoxin. | 0.614 |
dsbA | dsbA-2 | AWOD_I_0625 | AWOD_I_2618 | Thiol:disulfide interchange protein DsbA. | Thiol/disulfide interchange protein DsbA precursor. | 0.902 |
dsbA | dsbB | AWOD_I_0625 | AWOD_I_1757 | Thiol:disulfide interchange protein DsbA. | Disulfide bond formation protein B (disulfide oxidoreductase); Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein; Belongs to the DsbB family. | 0.894 |
dsbA | dsbD | AWOD_I_0625 | AWOD_I_0245 | Thiol:disulfide interchange protein DsbA. | Thiol:disulfide interchange protein DsbD precursor; Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a cascade of disulfide bond formation and reduction steps. Belongs to the thioredoxin family. DsbD subfamily. | 0.594 |
dsbA | ftsQ | AWOD_I_0625 | AWOD_I_0399 | Thiol:disulfide interchange protein DsbA. | Cell division protein FtsQ; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly. | 0.663 |
dsbA | holA | AWOD_I_0625 | AWOD_I_0722 | Thiol:disulfide interchange protein DsbA. | DNA polymerase III, delta subunit. | 0.575 |
dsbA | smpA | AWOD_I_0625 | AWOD_I_2111 | Thiol:disulfide interchange protein DsbA. | Lipoprotein, small protein A; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | 0.710 |
dsbA | sspB | AWOD_I_0625 | AWOD_I_0383 | Thiol:disulfide interchange protein DsbA. | Stringent starvation protein B. | 0.715 |
dsbA-2 | CED56981.1 | AWOD_I_2618 | AWOD_II_0333 | Thiol/disulfide interchange protein DsbA precursor. | Putative suppressor for copper-sensitivity B precursor. | 0.614 |
dsbA-2 | CED72628.1 | AWOD_I_2618 | AWOD_I_2577 | Thiol/disulfide interchange protein DsbA precursor. | Putative thioredoxin. | 0.614 |
dsbA-2 | dsbA | AWOD_I_2618 | AWOD_I_0625 | Thiol/disulfide interchange protein DsbA precursor. | Thiol:disulfide interchange protein DsbA. | 0.902 |
dsbA-2 | dsbB | AWOD_I_2618 | AWOD_I_1757 | Thiol/disulfide interchange protein DsbA precursor. | Disulfide bond formation protein B (disulfide oxidoreductase); Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein; Belongs to the DsbB family. | 0.892 |
dsbA-2 | dsbD | AWOD_I_2618 | AWOD_I_0245 | Thiol/disulfide interchange protein DsbA precursor. | Thiol:disulfide interchange protein DsbD precursor; Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a cascade of disulfide bond formation and reduction steps. Belongs to the thioredoxin family. DsbD subfamily. | 0.602 |
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