Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
MVIS_0177Polysaccharide deacetylase. (287 aa)    
Predicted Functional Partners:
MVIS_0178
Glycosyl transferase, group 1.
 
     0.806
MVIS_1951
Exosortase.
 
     0.806
MVIS_1944
Lipopolysaccharide export protein.
 
   
 0.788
MVIS_1943
Lipopolysaccharide biosynthesis protein.
 
     0.787
MVIS_1945
Sensor protein, histidine kinase.
 
     0.771
MVIS_2336
Chain length regulator (capsular polysaccharide biosynthesis).
 
     0.760
MVIS_1942
Lipopolysaccharide biosynthesis protein.
 
     0.747
MVIS_3513
Lipopolysaccharide biosynthesis protein.
 
     0.742
luxS
S-ribosylhomocysteine lyase; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD). Belongs to the LuxS family.
      
 0.649
MVIS_0179
Putative exported protein.
 
     0.632
Your Current Organism:
Moritella viscosa
NCBI taxonomy Id: 80854
Other names: ATCC BAA-105, M. viscosa, Moritella viscosa (Lunder et al. 2000) Benediktsdottir et al. 2000, NCIMB 13584, Vibrio viscosus, Vibrio viscosus Lunder et al. 2000, strain NVI 88/478
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