Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
MVIS_0296Sigma-54 dependent response regulator. (450 aa)    
Predicted Functional Partners:
MVIS_0295
Membrane associated histidine kinase.
 
  0.991
MVIS_0232
TRAP-type C4-dicarboxylate transport sensor protein, histidine kinase.
  0.959
MVIS_0231
TRAP-type C4-dicarboxylate transport sigma 54-dependent response regulator.
  
  
 
0.906
rpoN
RNA polymerase sigma-54 factor (sigma-N); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.797
flhG
Flagellar biosynthesis protein FlhG (flagellar number regulator).
  
 
 0.742
ntrB
Nitrogen regulation protein NtrB.
 
 0.702
varS
Response regulator, histidine kinase VarS.
  
 
 0.604
fliM-2
Polar flagellar switch protein FliM (flagellar motor switch protein FliM); FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
  
  
 0.592
MVIS_1198
Sensor protein, histidine kinase.
 
   0.558
fliO
Polar flagellar assembly protein FliO.
  
  
 0.543
Your Current Organism:
Moritella viscosa
NCBI taxonomy Id: 80854
Other names: ATCC BAA-105, M. viscosa, Moritella viscosa (Lunder et al. 2000) Benediktsdottir et al. 2000, NCIMB 13584, Vibrio viscosus, Vibrio viscosus Lunder et al. 2000, strain NVI 88/478
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