STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MVIS_0344Outer membrane efflux protein. (456 aa)    
Predicted Functional Partners:
MVIS_0345
Putative secretion protein, HlyD family.
 
 0.988
MVIS_0347
ABC-type multidrug transporter, permease component.
 
   
 0.951
MVIS_0346
ABC-type multidrug transporter, permease component.
 
   
 0.950
MVIS_2366
Secretion protein, HlyD family; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.660
MVIS_3160
Secretion protein, HlyD family.
  
 
 0.647
prtE
Proteases secretion protein prtE.
  
 
 0.647
rtxD
RTX toxin transporter.
  
 
 0.647
MVIS_1130
Putative secretion protein, HlyD family.
  
 
 0.642
MVIS_1542
Secretion protein, HlyD family.
  
 
 0.642
MVIS_3919
Putative secretion protein, HlyD family.
  
 
 0.642
Your Current Organism:
Moritella viscosa
NCBI taxonomy Id: 80854
Other names: ATCC BAA-105, M. viscosa, Moritella viscosa (Lunder et al. 2000) Benediktsdottir et al. 2000, NCIMB 13584, Vibrio viscosus, Vibrio viscosus Lunder et al. 2000, strain NVI 88/478
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