Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
varSResponse regulator, histidine kinase VarS. (911 aa)    
Predicted Functional Partners:
varA
Response regulator VarA.
 
 0.997
arcB-2
Response regulator, aerobic respiration control sensor protein ArcB.
 
 
0.997
MVIS_2030
Response regulator.
 
  
 0.994
MVIS_0978
Sensor protein, histidine kinase.
 
 
0.991
MVIS_1895
Putative regulator, GGDEF family protein.
 
 0.991
MVIS_0799
Response regulator.
 
 
0.990
MVIS_3506
Putative membrane associated signaling protein, GGDEF family protein.
 
 
 0.989
MVIS_2531
Sensor protein, histidine kinase.
 
 
0.988
MVIS_2533
Putative response regulator, GGDEF family protein.
 
 0.978
MVIS_4032
Putative regulator, GGDEF family protein.
 
 
 0.975
Your Current Organism:
Moritella viscosa
NCBI taxonomy Id: 80854
Other names: ATCC BAA-105, M. viscosa, Moritella viscosa (Lunder et al. 2000) Benediktsdottir et al. 2000, NCIMB 13584, Vibrio viscosus, Vibrio viscosus Lunder et al. 2000, strain NVI 88/478
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