Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MVIS_0478Putative type IV assembly protein. (148 aa)    
Predicted Functional Partners:
MVIS_0477
Putative type IV assembly protein.
 
  
 0.990
MVIS_0475
Putative type IV assembly protein.
 
  
 0.982
MVIS_0474
Putative type IV assembly protein.
  
  
 0.943
MVIS_0476
Putative type IV assembly protein.
  
  
 0.898
pilM
Fimbrial assembly protein PilM.
 
   
 0.871
pilO
Fimbrial assembly protein PilO.
 
  
 0.866
pilN
Fimbrial assembly protein PilN.
 
  
 0.864
pilQ
Fimbrial assembly protein PilQ precursor.
 
   
 0.862
pilP
Fimbrial assembly protein PilP.
  
  
 0.848
MVIS_1389
Putative uncharacterized protein.
 
  
 0.828
Your Current Organism:
Moritella viscosa
NCBI taxonomy Id: 80854
Other names: ATCC BAA-105, M. viscosa, Moritella viscosa (Lunder et al. 2000) Benediktsdottir et al. 2000, NCIMB 13584, Vibrio viscosus, Vibrio viscosus Lunder et al. 2000, strain NVI 88/478
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