Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
iucBSiderophore biosynthesis protein IucB. (325 aa)    
Predicted Functional Partners:
pvdA
L-ornithine 5-monooxygenase.
  
 0.996
MVIS_1111
Siderophore biosynthesis protein, IucA/IucC family.
 
  
 0.914
MVIS_0633
TonB-dependent siderophore receptor.
 
   
 0.871
MVIS_1112
Siderophore biosynthesis protein, IucA/IucC family.
  
 0.792
MVIS_0636
Ferric iron reductase FhuF-like transporter.
 
   
 0.762
MVIS_0631
Siderophore biosynthesis protein, non-ribosomal peptide synthetase.
 
     0.721
csgD
Probable CsgAB operon transcriptional regulatory protein.
    
 
 0.625
mviN
Virulence factor MviN homolog; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane.
     
 0.624
uspE
Universal stress protein E.
   
  
 0.619
rpoS
RNA polymerase sigma subunit RpoS; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response.
      
 0.618
Your Current Organism:
Moritella viscosa
NCBI taxonomy Id: 80854
Other names: ATCC BAA-105, M. viscosa, Moritella viscosa (Lunder et al. 2000) Benediktsdottir et al. 2000, NCIMB 13584, Vibrio viscosus, Vibrio viscosus Lunder et al. 2000, strain NVI 88/478
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