STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pvdAL-ornithine 5-monooxygenase. (431 aa)    
Predicted Functional Partners:
iucB
Siderophore biosynthesis protein IucB.
  
 0.996
MVIS_0630
MbtH-family protein.
 
  
 0.972
MVIS_1111
Siderophore biosynthesis protein, IucA/IucC family.
 
  
 0.932
MVIS_2969
Putative peptide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family.
 
 
 0.903
MVIS_0629
ABC transporter, ATP-binding protein.
 
  
 0.895
MVIS_2998
ABC transporter, permease protein.
 
  
 0.892
MVIS_0636
Ferric iron reductase FhuF-like transporter.
 
   
 0.889
MVIS_0631
Siderophore biosynthesis protein, non-ribosomal peptide synthetase.
 
 
 0.863
MVIS_1112
Siderophore biosynthesis protein, IucA/IucC family.
 
  
 0.856
MVIS_0633
TonB-dependent siderophore receptor.
 
   
 0.770
Your Current Organism:
Moritella viscosa
NCBI taxonomy Id: 80854
Other names: ATCC BAA-105, M. viscosa, Moritella viscosa (Lunder et al. 2000) Benediktsdottir et al. 2000, NCIMB 13584, Vibrio viscosus, Vibrio viscosus Lunder et al. 2000, strain NVI 88/478
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