STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lafKSigma-54 dependent lateral flagellar regulatory protein. (443 aa)    
Predicted Functional Partners:
flaL
Flagellar sensor protein, histidine kinase.
 0.948
MVIS_0748
Outer membrane protein.
  
    0.912
fliF
Polar flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.
  
  
 0.912
flaM
Sigma-54 dependent response regulator.
  
  
 
0.908
fliEL
Flagellar hook-basal body complex protein fliE 1.
  
  
 0.884
fliG
Polar flagellar motor switch protein FliG.
  
  
 0.863
fliH
Polar flagellar assembly protein FliH.
  
  
 0.847
rpoN
RNA polymerase sigma-54 factor (sigma-N); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.799
fliI
Polar flagellum-specific ATP synthase FliI.
  
  
 0.796
flhG
Flagellar biosynthesis protein FlhG (flagellar number regulator).
  
 
 0.743
Your Current Organism:
Moritella viscosa
NCBI taxonomy Id: 80854
Other names: ATCC BAA-105, M. viscosa, Moritella viscosa (Lunder et al. 2000) Benediktsdottir et al. 2000, NCIMB 13584, Vibrio viscosus, Vibrio viscosus Lunder et al. 2000, strain NVI 88/478
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