Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rcpCPutative Flp pilus assembly protein. (272 aa)    
Predicted Functional Partners:
MVIS_0923
Fimbrial protein, Flp/Fap pilin component.
  
  
 0.910
tadC
Bacterial type II secretion system protein F.
  
  
 0.905
MVIS_0926
Type II/III secretion system protein; Belongs to the bacterial secretin family.
  
  
 0.901
tadB
Bacterial type II secretion system protein F.
  
  
 0.898
tadV
Type IV leader peptidase.
  
  
 0.897
tadE
Membrane associated secretion system protein.
  
    0.890
tadA
Type II/IV secretion system protein, ATP binding domain.
  
  
 0.870
tadZ-3
Type II secretion system protein Z.
  
  
 0.822
MVIS_2030
Response regulator.
   
    0.797
tadD
Putative secretion system protein.
  
  
 0.794
Your Current Organism:
Moritella viscosa
NCBI taxonomy Id: 80854
Other names: ATCC BAA-105, M. viscosa, Moritella viscosa (Lunder et al. 2000) Benediktsdottir et al. 2000, NCIMB 13584, Vibrio viscosus, Vibrio viscosus Lunder et al. 2000, strain NVI 88/478
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