Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
luxRTranscriptional activator protein LuxR. (244 aa)    
Predicted Functional Partners:
varS
Response regulator, histidine kinase VarS.
  
 
 0.955
arcB-2
Response regulator, aerobic respiration control sensor protein ArcB.
 
 
 
 0.886
MVIS_3922
HTH-type transcriptional regulator, luxR family.
  
     0.681
flgK
Flagellar hook-associated protein type 1.
  
  
 0.673
MVIS_1967
DNA-binding response regulator.
  
     0.650
cheA
Chemotaxis protein CheA.
  
  
 0.636
cheA-2
Chemotaxis protein CheA.
  
  
 0.636
relA
GTP pyrophosphokinase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
      
 0.631
MVIS_2531
Sensor protein, histidine kinase.
   
 
 0.631
varA
Response regulator VarA.
  
     0.626
Your Current Organism:
Moritella viscosa
NCBI taxonomy Id: 80854
Other names: ATCC BAA-105, M. viscosa, Moritella viscosa (Lunder et al. 2000) Benediktsdottir et al. 2000, NCIMB 13584, Vibrio viscosus, Vibrio viscosus Lunder et al. 2000, strain NVI 88/478
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