STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MVIS_1111Siderophore biosynthesis protein, IucA/IucC family. (655 aa)    
Predicted Functional Partners:
pvdA
L-ornithine 5-monooxygenase.
 
  
 0.932
iucB
Siderophore biosynthesis protein IucB.
 
  
 0.914
MVIS_1112
Siderophore biosynthesis protein, IucA/IucC family.
 
   
0.912
MVIS_1110
MFS transporter.
 
  
 0.849
MVIS_1113
TonB-dependent ferric siderophore receptor.
  
  
 0.836
MVIS_2446
Putative diaminobutyrate--2-oxoglutarate aminotransferase.
 
  
 0.559
MVIS_1109
MFS transporter.
       0.524
MVIS_0636
Ferric iron reductase FhuF-like transporter.
  
  
 0.405
Your Current Organism:
Moritella viscosa
NCBI taxonomy Id: 80854
Other names: ATCC BAA-105, M. viscosa, Moritella viscosa (Lunder et al. 2000) Benediktsdottir et al. 2000, NCIMB 13584, Vibrio viscosus, Vibrio viscosus Lunder et al. 2000, strain NVI 88/478
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.