STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MVIS_1264Putative uncharacterized phage protein. (207 aa)    
Predicted Functional Partners:
MVIS_1267
Putative tail tape measure protein.
 
     0.901
MVIS_1257
Major capsid protein.
 
     0.804
MVIS_1256
Capsid scaffolding protein.
 
     0.802
MVIS_1263
Putative tail tube protein.
       0.781
MVIS_1254
Capsid portal protein.
 
     0.778
MVIS_2014
Phage tail tape measure protein, TP901 family, core region,Phage-related minor tail protein.
 
     0.773
MVIS_1265
Putative uncharacterized phage protein.
       0.772
MVIS_1262
Putative tail sheath protein.
       0.764
MVIS_1255
Terminase, ATPase subunit.
 
     0.761
MVIS_1261
Putative tail completion protein.
       0.739
Your Current Organism:
Moritella viscosa
NCBI taxonomy Id: 80854
Other names: ATCC BAA-105, M. viscosa, Moritella viscosa (Lunder et al. 2000) Benediktsdottir et al. 2000, NCIMB 13584, Vibrio viscosus, Vibrio viscosus Lunder et al. 2000, strain NVI 88/478
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