STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MVIS_1306Response regulator. (550 aa)    
Predicted Functional Partners:
varS
Response regulator, histidine kinase VarS.
  
 
 0.959
arcB-2
Response regulator, aerobic respiration control sensor protein ArcB.
 
 
 
 0.932
MVIS_3440
Sensor protein, histidine kinase.
 
 
 0.868
lpxC
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the LpxC family.
    
 
 0.809
MVIS_2531
Sensor protein, histidine kinase.
 
 
 
 0.779
MVIS_1636
Membrane associated sulphatase.
    
 
 0.747
MVIS_1554
Sensor protein, histidine kinase.
 
 
 
 0.703
MVIS_0204
Response regulator.
 
 
 
 0.700
cheV
Chemotaxis protein methyltransferase CheV.
 
 
 
 0.694
MVIS_3053
Sensor protein, histidine kinase.
 
 
 
 0.693
Your Current Organism:
Moritella viscosa
NCBI taxonomy Id: 80854
Other names: ATCC BAA-105, M. viscosa, Moritella viscosa (Lunder et al. 2000) Benediktsdottir et al. 2000, NCIMB 13584, Vibrio viscosus, Vibrio viscosus Lunder et al. 2000, strain NVI 88/478
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