STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MVIS_1629Fatty-acid desaturase. (380 aa)    
Predicted Functional Partners:
MVIS_3961
Fatty acid desaturase.
  
 0.948
MVIS_3962
Putative oxidoreductase.
  
  
 0.922
cysK
Cysteine synthase A; Belongs to the cysteine synthase/cystathionine beta- synthase family.
    
   0.698
pfaC
Putative polyunsaturated fatty acid synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
   
 
 0.663
MVIS_0278
HTH-type transcriptional regulator, TetR-family.
 
   
 0.649
pfaA
Putative polyunsaturated fatty acid synthase.
  
 
 0.625
accC
Biotin carboxylase (acetyl-CoA carboxylase subunit A); This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
   
  
 0.581
MVIS_3494
Cytochrome P450.
  
 0.560
MVIS_1630
Putative uncharacterized protein.
       0.559
pfaB
Putative polyunsaturated fatty acid synthase.
   
 
 0.554
Your Current Organism:
Moritella viscosa
NCBI taxonomy Id: 80854
Other names: ATCC BAA-105, M. viscosa, Moritella viscosa (Lunder et al. 2000) Benediktsdottir et al. 2000, NCIMB 13584, Vibrio viscosus, Vibrio viscosus Lunder et al. 2000, strain NVI 88/478
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