STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MVIS_1667Putative exported protein. (450 aa)    
Predicted Functional Partners:
MVIS_1666
Membrane protein.
 
     0.947
MVIS_1668
Membrane protein, sterol-sensing domain.
 
     0.794
MVIS_2963
Membrane protein.
 
     0.794
MVIS_2962
Putative exported protein.
 
     0.793
MVIS_2964
HTH-type transcriptional regulator, TetR family.
 
     0.666
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
    0.555
MVIS_0201
Putative exported protein.
   
    0.521
MVIS_0945
Putative exported YceI-like domain protein; Belongs to the UPF0312 family.
 
     0.505
MVIS_0108
Glutaredoxin.
    
   0.435
grxB
Glutaredoxin 2.
    
   0.435
Your Current Organism:
Moritella viscosa
NCBI taxonomy Id: 80854
Other names: ATCC BAA-105, M. viscosa, Moritella viscosa (Lunder et al. 2000) Benediktsdottir et al. 2000, NCIMB 13584, Vibrio viscosus, Vibrio viscosus Lunder et al. 2000, strain NVI 88/478
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